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MCP server · Healthcare

bioinformatics-mcp-server

· github.com/AiAgentKarl/bioinformatics-mcp-server

MCP-Server für Bioinformatik-Daten — Gene, Proteine, PubMed-Literatur, Varianten und Sequenzen via NCBI & UniProt

Unclaimed healthcare
InstallView source
37Low

Scored 6 months ago · breakdown

About bioinformatics-mcp-server

bioinformatics-mcp-server is an MCP server in the Healthcare category: mCP-Server für Bioinformatik-Daten — Gene, Proteine, PubMed-Literatur, Varianten und Sequenzen via NCBI & UniProt.

Install

uvx
uvx bioinformatics-mcp-server
pip
pip install bioinformatics-mcp-server

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (5)

get_gene_detailsFull gene info by NCBI Gene ID

Parameters not published.

get_ncbi_sequenceDNA/protein sequences (FASTA/GenBank)

Parameters not published.

get_taxonomyTaxonomic classification of organisms

Parameters not published.

search_clinvar_variantsClinical variants and mutations

Parameters not published.

search_genesSearch genes by symbol, name, or function

Parameters not published.

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Security checks

  • ✓README presentThe repository ships documentation.

5 checks have not been run yet.

README

bioinformatics-mcp-server

Bioinformatics and life science data for AI agents — gene search, protein structures, clinical variants, PubMed literature, and DNA sequences via NCBI and UniProt.

PyPI version

No API key required. 10 tools covering 6 data sources (NCBI Gene, ClinVar, Taxonomy, PubMed, Sequences, UniProt).

Quick Start

pip install bioinformatics-mcp-server

{
  "mcpServers": {
    "bioinformatics": {
      "command": "uvx",
      "args": ["bioinformatics-mcp-server"]
    }
  }
}

What Can You Do?

Ask your AI agent things like:

  • "Search for genes related to breast cancer"
  • "What clinical variants are known for BRCA1?"
  • "Find recent PubMed papers about CRISPR gene editing"
  • "Get the protein structure of human insulin from UniProt"
  • "What species does this organism belong to?"

10 Tools

NCBI (5 tools)

Tool What it does
search_genes Search genes by symbol, name, or function
get_gene_details Full gene info by NCBI Gene ID
search_clinvar_variants Clinical variants and mutations
get_taxonomy Taxonomic classification of organisms
get_ncbi_sequence DNA/protein sequences (FASTA/GenBank)

UniProt (2 tools)

Tool What it does
search_proteins Search proteins by name, gene, or organism
get_protein_details Protein details by UniProt accession

PubMed (3 tools)

Tool What it does
search_pubmed Search biomedical literature
get_pubmed_abstract Full abstract of a PubMed article
get_pubmed_citations Articles citing a specific publication

Related Servers

License

MIT

README copy captured when this server was indexed; it may lag the repository. The original is authoritative.

Questions

About bioinformatics-mcp-server

How do I install bioinformatics-mcp-server?

Run uvx bioinformatics-mcp-server, then add the server to your MCP client's configuration.

Is bioinformatics-mcp-server safe to use with an AI agent?

Its trust score is 37 out of 100 (low). It passes 1 of the 1 static security checks run so far. It has no ConduID identity yet, so agent calls to it are not receipted.

Is bioinformatics-mcp-server still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.