1. Conduid
  2. Search
  3. Biomcp Examples
MCP server · Search

Biomcp Examples

· github.com/genomoncology/biomcp-examples

Example chats from running BioMCP for demonstrations

Unclaimed search
InstallView source
39Low

Scored 6 months ago · breakdown

About Biomcp Examples

Biomcp Examples is an MCP server in the Search category: example chats from running BioMCP for demonstrations.

Install

From source
git clone https://github.com/genomoncology/biomcp-examples

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Ask AI

✦

Ask AI about Biomcp Examples

Powered by Claude · Grounded in docs

I know everything about Biomcp Examples. Ask me about installation, configuration, usage, or troubleshooting.

Security checks

  • ✓README presentThe repository ships documentation.

5 checks have not been run yet.

README

BioMCP‑Examples

A companion repository of worked examples that demonstrate how the BioMCP toolkit can be used (and tested) by a variety of large‑language‑model "personas".

Each example poses a real biomedical question, records several independent answers produced by different LLM systems, and includes third‑party judgment runs so you can compare quality side‑by‑side.

Why keep these examples?

  • Build a public, reproducible corpus for benchmarking BioMCP and future MCP‑compatible agents.
  • Provide ready‑made testbeds for debugging new tools, prompts, or evaluation pipelines.
  • Offer concrete reference material for presentations and tutorials.

Repository layout

biomcp-examples/
│  README.md          ← you are here
│  LICENSE            ← MIT, same as BioMCP
└─ researcher_hnscc/  ← one experiment (HNSCC treatment strategies)
   ├─ example_*.md    ← answers produced by different models
   ├─ evals/          ← judgment runs by Claude 3.7, Gemini 2.5 Pro, OpenAI o3
   └─ README.md       ← experiment‑specific notes

Adding a new experiment

Pull requests welcome! Please follow the MIT license and respect citations.

Create a folder at the repo root (e.g. my_new_question/) with: - README.md – describe the question, prompt, model settings, etc. - One or more example_?.md files with the raw model outputs. - Optionally an evals/ sub‑folder with judge outputs.

Experiments

ID Primary Question / Task BioMCP capabilities exercised Folder
researcher_hnscc “What are the emerging treatment strategies for head and neck cancer?” PubMed & ClinicalTrials.gov search, evidence aggregation, Sequential‑Thinking outer loop, tool chaining; judged by Claude 3.7, Gemini 2.5 Pro & OpenAI o3 researcher_hnscc

More rows to come – feel free to add yours!

License

This repository is released under the MIT License (see LICENSE).

Maintainers

@imaurer • GenomOncology Engineering

README copy captured when this server was indexed; it may lag the repository. The original is authoritative.

Questions

About Biomcp Examples

How do I install Biomcp Examples?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Biomcp Examples safe to use with an AI agent?

Its trust score is 39 out of 100 (low). It passes 1 of the 1 static security checks run so far. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Biomcp Examples still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.