About Cbioportal
Cbioportal is an MCP server in the Healthcare category: cBioPortal MCP — cancer genomics portal.
Install
From source
git clone https://github.com/pipeworx-io/mcp-cbioportalThis server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.
Tools (4)
get_geneResolve a gene to its Entrez gene id and canonical info via cBioPortal. Accepts a HUGO symbol (e.g. "TP53", "BRCA1") or an Entrez gene id. Returns entrez_gene_id, symbol, and type.
Parameters not published.
get_studyGet full details for one cBioPortal cancer study by its study id (e.g. "brca_tcga_pub", "glioma_mskcc_2019"), including description, cancer type, sample count, PMID, and citation.
Parameters not published.
list_cancer_typesList cancer types defined in cBioPortal (id, display name, parent type). Useful for resolving cancer-type ids used by studies.
Parameters not published.
search_studiesSearch public cancer genomics studies in cBioPortal (TCGA, CPTAC, MSK, etc.) by keyword. Matches study name, study id, or cancer-type id (case-insensitive). Returns study ids, names, cancer types, and sample counts. Keyless, open data.
Parameters not published.
Ask AI
✦
Ask AI about Cbioportal
Powered by Claude · Grounded in docs
I know everything about Cbioportal. Ask me about installation, configuration, usage, or troubleshooting.
Security checks
6 checks have not been run yet.