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MCP server · Other

Expression Atlas

by · github.com/pipeworx-io/mcp-expression-atlas

EBI Expression Atlas MCP.

Unclaimed other
InstallView source
34Low

Scored 4 months ago · breakdown

About Expression Atlas

Expression Atlas is an MCP server published by pipeworx-io in the Other category: eBI Expression Atlas MCP.

Recent commit activity is the strongest signal that reported issues will get attention.

Install

From source
git clone https://github.com/pipeworx-io/mcp-expression-atlas

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (2)

get_experimentGet metadata for a single EBI Expression Atlas experiment by accession (e.g. "E-MTAB-4045"). Returns accession, description, species, type, assay count, and experimental factors.

Parameters not published.

search_experimentsSearch EBI Expression Atlas — ~4,500 curated gene/protein expression experiments (baseline & differential) across species, tissues, and conditions. Filter by keyword (matches description/experimental factors), species (e.g. "Homo sapiens", "Mus musculus"), and/or type ("Baseline" or "Differential"). Returns accession, description, species, type, assay count, and factors. Keyless. Complements UniProt/Ensembl.

Parameters not published.

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Questions

About Expression Atlas

How do I install Expression Atlas?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Expression Atlas safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Expression Atlas still maintained?

Yes — the last commit was yesterday. The repository has 0 stars and 0 forks.