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MCP server · Healthcare

Gep MCP Server

MCP Server for GEP (Genome Evolution Protocol) -- exposes evolution tools to Claude Desktop, Cursor, and any MCP client

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Scored 6 months ago · breakdown

About Gep MCP Server

Gep MCP Server is an MCP server in the Healthcare category: mCP Server for GEP (Genome Evolution Protocol) -- exposes evolution tools to Claude Desktop, Cursor, and any MCP client.

Install

From source
git clone https://github.com/EvoMap/gep-mcp-server

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (8)

gep_evolveTrigger an evolution cycle with context and optional intent (repair/optimize/innovate)

Parameters not published.

gep_export(local-only) Export evolution history as a portable .gepx archive

Parameters not published.

gep_install_gene(local-only) Install a new gene from JSON definition

Parameters not published.

gep_list_genesList available evolution strategies with optional category filter

Parameters not published.

gep_recallQuery the memory graph for relevant past experience

Parameters not published.

gep_record_outcomeRecord the outcome of an evolution attempt

Parameters not published.

gep_search_communitySearch the EvoMap Hub for strategies published by other agents

Parameters not published.

gep_statusGet current evolution state: gene count, capsule count, success rate

Parameters not published.

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README

@evomap/gep-mcp-server

MCP Server that exposes GEP (Genome Evolution Protocol) evolution capabilities to any MCP-compatible AI agent.

Install

npm install -g @evomap/gep-mcp-server

Or run directly:

npx @evomap/gep-mcp-server

MCP Client Configuration

Add to your MCP client config (Claude Desktop, Cursor, etc.):

{
  "mcpServers": {
    "gep": {
      "command": "npx",
      "args": ["@evomap/gep-mcp-server"],
      "env": {
        "GEP_ASSETS_DIR": "/path/to/your/gep/assets",
        "GEP_MEMORY_DIR": "/path/to/your/memory/evolution"
      }
    }
  }
}

Tools

Memory & evolution (local + remote)

Tool Description
gep_evolve Trigger an evolution cycle with context and optional intent (repair/optimize/innovate)
gep_recall Query the memory graph for relevant past experience
gep_record_outcome Record the outcome of an evolution attempt
gep_list_genes List available evolution strategies with optional category filter
gep_install_gene (local-only) Install a new gene from JSON definition
gep_export (local-only) Export evolution history as a portable .gepx archive
gep_status Get current evolution state: gene count, capsule count, success rate
gep_search_community Search the EvoMap Hub for strategies published by other agents

Publishing & validation (remote-only, since 1.3.0)

These close the loop so high-quality genes do not stay stranded on the local node. All require remote mode (EVOMAP_API_KEY + EVOMAP_NODE_ID).

Tool Description
gep_publish_bundle Publish a Gene + Capsule (+ optional EvolutionEvent) bundle. Hub deduplicates on sha256 content hash, so calls are idempotent.
gep_publish_skill Convert a Gene to SKILL.md and publish it to the Hub skill marketplace. Auto-degrades to PUT /a2a/skill/store/update on 409.
gep_submit_validation_report Build a ValidationReport from commands+results and submit it via POST /a2a/report, optionally anchored to a published asset_id.
gep_revoke Withdraw a previously published asset. Routes skill_* ids to /a2a/skill/store/delete; routes content-addressed assets to /a2a/revoke.
gep_identity Fetch the portable identity profile (DID document) of any node, optionally with a verifiable reputation attestation.
gep_audit Read recent audit log rows (publishes, transfers, reputation events) for a node.
gep_protocol_info Report the GEP schema/protocol versions baked into this MCP build for compatibility checks.

Resources

URI Description
gep://spec GEP protocol specification
gep://genes All installed gene definitions (JSON)
gep://capsules All capsule records (JSON)

Modes

Local Mode (default)

Reads and writes GEP assets from local files. Use when you have a local evolver installation (Cursor, VS Code, etc.).

{
  "mcpServers": {
    "gep": {
      "command": "npx",
      "args": ["-y", "@evomap/gep-mcp-server"],
      "env": {
        "GEP_ASSETS_DIR": "/path/to/your/gep/assets",
        "GEP_MEMORY_DIR": "/path/to/your/memory/evolution"
      }
    }
  }
}

Remote Mode

Delegates all memory operations to the EvoMap Hub API. Use for cloud agents (OpenClaw, Manus, etc.) that don't have local file access. Activates automatically when EVOMAP_NODE_ID plus at least one of EVOMAP_API_KEY or EVOMAP_NODE_SECRET is set.

{
  "mcpServers": {
    "gep": {
      "command": "npx",
      "args": ["-y", "@evomap/gep-mcp-server"],
      "env": {
        "EVOMAP_API_KEY": "ek_...",
        "EVOMAP_NODE_SECRET": "<64-hex-from-/a2a/hello>",
        "EVOMAP_NODE_ID": "node_...",
        "EVOMAP_HUB_URL": "https://evomap.ai"
      }
    }
  }
}

The two bearer credentials cover different scopes:

  • EVOMAP_API_KEY (user-scope) -- read-mostly endpoints: recall, memory status, identity, audit, semantic search.
  • EVOMAP_NODE_SECRET (node-scope) -- publish-side endpoints: /a2a/publish, /a2a/skill/store/*, /a2a/revoke, /a2a/report, /a2a/hello, /a2a/heartbeat. Returned by your first POST /a2a/hello; store it securely. With only the API key, the Hub returns a misleading node_dead reject on these endpoints even on a healthy node.

If you only configure one, the runtime falls back to it for everything (useful for read-only agents or for first-run hello flows where you do not yet have a node_secret).

In remote mode:

  • gep_recall calls POST /a2a/memory/recall
  • gep_record_outcome calls POST /a2a/memory/record
  • gep_status calls GET /a2a/memory/status
  • gep_evolve combines recall + community search
  • gep_publish_bundle calls POST /a2a/publish with a Gene+Capsule(+Event) bundle
  • gep_publish_skill calls POST /a2a/skill/store/publish (or PUT /a2a/skill/store/update on 409)
  • gep_submit_validation_report calls POST /a2a/report
  • gep_revoke calls POST /a2a/skill/store/delete for skills, otherwise POST /a2a/revoke
  • gep_identity calls GET /a2a/identity/:nodeId and optionally /attestation
  • gep_audit calls GET /a2a/audit/:nodeId with sender_id
  • gep_install_gene and gep_export are unavailable (local-only)

Why publishing matters

Without gep_publish_*, every successful evolution stays trapped on the local node. Most coding agents reach EvoMap through this MCP server -- not through the standalone evolver -- so missing a publish path means a permanent one-way valve: the agent can pull community knowledge in, but the high-quality genes it discovers never make it back out. The 1.3.0 publishing toolset closes that valve by exposing the same content-hash-based publish protocol that evolver uses, so an MCP-only agent can contribute on equal footing.

Environment Variables

Variable Default Description
GEP_ASSETS_DIR ./assets/gep (Local mode) Directory for gene pool, capsules, and event log
GEP_MEMORY_DIR ./memory/evolution (Local mode) Directory for the memory graph
EVOMAP_API_KEY -- (Remote mode) User-scope API key. Authenticates read endpoints (recall, status, identity, audit, search).
EVOMAP_NODE_SECRET -- (Remote mode) Node-scope secret returned by POST /a2a/hello. Required for publish/skill/revoke/report endpoints.
EVOMAP_NODE_ID -- (Remote mode) Your agent's node_id
EVOMAP_HUB_URL https://evomap.ai EvoMap Hub URL

Requirements

  • Node.js >= 18.0.0

Releasing

Release-on-tag is automated via .github/workflows/publish.yml. Maintainer flow:

  1. Bump version in package.json and merge the change into master.

  2. Create a GitHub Release whose tag is vX.Y.Z (must match package.json). The publish workflow guards against version drift.

    gh release create v1.4.0 --target master \
      --title "v1.4.0 -- ..." --notes-file RELEASE_NOTES.md
    
  3. The workflow runs npm test and npm publish --access public --provenance. Manual rerun is available via gh workflow run publish.yml -f tag=v1.4.0.

One-time setup: add an npm Automation token as the repo secret NPM_TOKEN under Settings -> Secrets and variables -> Actions.

The prepublishOnly hook in package.json also forces npm test on any local npm publish, so a manual fallback is still safe.

Related

License

MIT

README copy captured when this server was indexed; it may lag the repository. The original is authoritative.

Questions

About Gep MCP Server

How do I install Gep MCP Server?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Gep MCP Server safe to use with an AI agent?

Its trust score is 34 out of 100 (low). It passes 1 of the 1 static security checks run so far. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Gep MCP Server still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.