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MCP server · Healthcare

io.github.cyanheads/uniprot-mcp-server

· github.com/cyanheads/uniprot-mcp-server

Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.

Unclaimed healthcare
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Scored 3 months ago · breakdown

About io.github.cyanheads/uniprot-mcp-server

io.github.cyanheads/uniprot-mcp-server is an MCP server in the Healthcare category: protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.

Install

Claude Code
claude mcp add io-github-cyanheads-uniprot-mcp-server -- npx -y @cyanheads/uniprot-mcp-server
npx
npx -y @cyanheads/uniprot-mcp-server

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (6)

uniprot_get_entryFetch full curated entries by accession in one batch (up to 20) — function, catalytic activity, disease, variants, isoforms, GO terms, cross-references. Partial-success output; an oversized record returns a section outline.

Parameters not published.

uniprot_get_proteomeFetch a reference proteome by UPID or NCBI taxon ID — protein count, BUSCO completeness, genome assembly inline, plus an opt-in capped page of the proteins.

Parameters not published.

uniprot_get_sequenceFetch the canonical amino-acid sequence (FASTA) for an accession, with length and parsed header — and optionally the isoform sequences. The cheap sequence-only path.

Parameters not published.

uniprot_get_taxonomyResolve a taxonomy record by NCBI taxon ID or scientific name — name, rank, parent, full lineage, and optionally the immediate children.

Parameters not published.

uniprot_map_idsTranslate identifiers across databases via UniProt's async ID-mapping service — gene names, Ensembl, RefSeq, ChEMBL, PDB, GeneID ↔ UniProtKB accessions. Polls within a budget; running jobs return a ticket and completed pages return a continuation.

Parameters not published.

uniprot_search_proteinsSearch UniProtKB by plain text or a Lucene field query, with the reviewed (Swiss-Prot) filter foregrounded and optional server-side facet counts. Cursor-paginated. The discovery entry point.

Parameters not published.

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Questions

About io.github.cyanheads/uniprot-mcp-server

How do I install io.github.cyanheads/uniprot-mcp-server?

Run claude mcp add io-github-cyanheads-uniprot-mcp-server -- npx -y @cyanheads/uniprot-mcp-server, then add the server to your MCP client's configuration.

Is io.github.cyanheads/uniprot-mcp-server safe to use with an AI agent?

Its trust score is 37 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is io.github.cyanheads/uniprot-mcp-server still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.