About io.github.smaniches/uniprot-mcp
io.github.smaniches/uniprot-mcp is an MCP server in the Healthcare category: model Context Protocol server for the UniProt protein knowledgebase.
Install
uvx uniprot-mcp-serverpip install uniprot-mcp-serverThis server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.
Tools (10)
uniprot_batch_entriesUp to 100 entries in one call; invalid accessions filtered client-side.
Parameters not published.
uniprot_get_cross_refsRaw cross-references to PDB, Pfam, Ensembl, Reactome, KEGG, STRING …
Parameters not published.
uniprot_get_entryFull UniProt entry (e.g. `P04637` for p53). Function, gene, organism, disease, cross-refs.
Parameters not published.
uniprot_get_featuresDomains, binding sites, PTMs, signal peptides — optional type filter.
Parameters not published.
uniprot_get_go_termsGO annotations grouped by aspect (F / P / C).
Parameters not published.
uniprot_get_sequenceFASTA. PIR-style provenance comment block above the first record (BLAST+ / biopython compatible).
Parameters not published.
uniprot_get_variantsNatural variants and disease mutations.
Parameters not published.
uniprot_id_mappingMap IDs between databases (Gene_Name → UniProtKB, PDB → UniProtKB, …).
Parameters not published.
uniprot_searchUniProt query language — gene, organism, taxon ID, reviewed flag, free text.
Parameters not published.
uniprot_taxonomy_searchSearch UniProt taxonomy by organism name.
Parameters not published.
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