About MDEngine
MDEngine is an MCP server published by forcefieldsilicon in the Files category: mD workbench for agents: inspect/render trajectories, depth profiles, detached LAMMPS jobs.
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Install
git clone https://github.com/forcefieldsilicon/mdengineThis server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.
Tools (11)
decimateKeep every Nth frame (final frame always kept)
Parameters not published.
export_frameOne frame → XYZ; `charges: true` → extended-XYZ with the q column
Parameters not published.
fetch_jobPull a remote job's run directory (dumps, data) + logs into the local job dir under `results/`
Parameters not published.
job_filesLocate a finished job's outputs (run dir + bookkeeping dir)
Parameters not published.
list_hostsExecution hosts from `~/.mdengine/hosts.json` and which is the default
Parameters not published.
render_imageOne frame → PNG with the same camera/style options — lets an agent *see* a simulation state
Parameters not published.
render_videoTrajectory → MP4 (H.264) or animated GIF via the Metal renderer: camera angles, stride, cinematic orbit, baked scale-bar/frame annotations, per-element `colors`/`sizes`, `style: "contrast"` auto-visibility
Parameters not published.
run_lammpsSynchronous run for short tests only
Parameters not published.
submit_lammpsDetached LAMMPS job: survives the server exiting and machine display-sleep (`caffeinate`), exit code recorded unattended
Parameters not published.
trajectory_infoFrames, atom counts, per-atom fields, elements, bbox, charge range
Parameters not published.
z_profileDeposition/oxidation depth analysis: substrate surface plane, probe penetration depths (min/mean/max), at-surface & in-flight counts, bound-probe charge, z histogram
Parameters not published.
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