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MCP server · Healthcare

Pdbe

· github.com/pipeworx-io/mcp-pdbe

PDBe (Protein Data Bank in Europe, EBI) MCP.

Unclaimed healthcare
InstallView source
34Low

Scored 4 months ago · breakdown

About Pdbe

Pdbe is an MCP server in the Healthcare category: pDBe (Protein Data Bank in Europe, EBI) MCP.

Install

From source
git clone https://github.com/pipeworx-io/mcp-pdbe

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (3)

get_moleculesPDBe (EBI): list the molecules/entities in a PDB structure — proteins, nucleic acids, and ligands, each with entity_id, molecule_type, name, and chain length. Keyless. Pass a 4-char PDB id like "1cbs".

Parameters not published.

get_summaryPDBe (Protein Data Bank in Europe, EBI): get a PDB entry summary — title, experimental method, release date, source organism, and entity counts (polypeptide/ligand/water/...). Keyless. The EBI counterpart to RCSB PDB. Pass a 4-char PDB id like "1cbs".

Parameters not published.

uniprot_mappingsPDBe (EBI): SIFTS cross-database mapping of a PDB structure to UniProt — for each UniProt accession, the matching chains and residue range. Curated cross-database mappings unique to EBI. Keyless. Pass a 4-char PDB id like "1cbs".

Parameters not published.

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Questions

About Pdbe

How do I install Pdbe?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Pdbe safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Pdbe still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.