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MCP server · AI

phylokit-mcp

by · github.com/musharna/phylokit-mcp

Phylogenetic inference via IQ-TREE 2 — never returns a topology without its support

Unclaimed ai
InstallView source
37Low

Scored 2 months ago · breakdown

About phylokit-mcp

phylokit-mcp is an MCP server published by musharna in the AI category: phylogenetic inference via IQ-TREE 2 — never returns a topology without its support.

Recent commit activity is the strongest signal that reported issues will get attention.

Install

uvx
uvx phylokit-mcp
pip
pip install phylokit-mcp

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (5)

capabilitiesEngine version, 215 substitution models, enforced limits.

Parameters not published.

compare_treesRobinson–Foulds distance and the clades that differ. Compares splits, not strings.

Parameters not published.

infer_treeML tree **plus** bootstrap support, per clade. Never one without the other.

Parameters not published.

select_substitution_modelRanks 100+ models with ΔAIC/AICc/BIC, and says when the criteria disagree.

Parameters not published.

simulate_alignmentGenerates sequences along a tree you specify — the positive control.

Parameters not published.

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Security checks

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Questions

About phylokit-mcp

How do I install phylokit-mcp?

Run uvx phylokit-mcp, then add the server to your MCP client's configuration.

Is phylokit-mcp safe to use with an AI agent?

Its trust score is 37 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is phylokit-mcp still maintained?

Yes — the last commit was 9 hours ago. The repository has 0 stars and 0 forks.