MCP servers tagged 3d-genome

1 live MCP servers tagged "3d-genome", ranked by trust score. Tags come from package metadata and repository topics, so this list covers servers across every category that work with 3d-genome.

live servers

avg trust

Hic MCP

javrodriguez

MCP server for Hi-C / 3D-chromatin analysis: the open2c stack (cooler, cooltools) as agent tools over local .mcool files, with a real Micro-C dataset bundled so it runs offline.