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MCP server · Developer Tools

Cootmcp

by · github.com/KodyKlupt/cootmcp

Connecting COOT (Crystallographic Object-Oriented Toolkit) to Claude with MCP for easier control.

Unclaimed last commit 7 months ago devtools
InstallView source
34Low

Scored a month ago · breakdown

About Cootmcp

Cootmcp is an MCP server published by KodyKlupt in the Developer Tools category: connecting COOT (Crystallographic Object-Oriented Toolkit) to Claude with MCP for easier control.

The repository has 3 stars and 0 forks, with the last commit 7 months ago. Six months or more without a commit doesn't mean the server is broken, but check the open issues before depending on it in production.

Install

From source
git clone https://github.com/KodyKlupt/cootmcp

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (13)

get_lessonsLoad accumulated tips and lessons from past sessions

Parameters not published.

get_statusCheck connection and list loaded molecules

Parameters not published.

go_to_residueNavigate to a specific chain/residue

Parameters not published.

launch_cootStart Coot 1.x and enable XML-RPC; run this first

Parameters not published.

list_moleculesList all loaded molecules and maps with their numbers

Parameters not published.

load_mapLoad an MTZ map (specify F and PHI column labels)

Parameters not published.

load_structureLoad a PDB or mmCIF file

Parameters not published.

refine_residuesRun real-space refinement on residues

Parameters not published.

run_coot_pythonExecute arbitrary Python in Coot (escape hatch)

Parameters not published.

save_lessonSave a new lesson or finding for future sessions

Parameters not published.

Show all 13 tools
screenshot_cootCapture the live Coot window — Claude sees the image

Parameters not published.

set_map_sigmaAdjust map contour level (in sigma units)

Parameters not published.

validate_geometryCheck Ramachandran and rotamer scores

Parameters not published.

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Questions

About Cootmcp

How do I install Cootmcp?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Cootmcp safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Cootmcp still maintained?

The last commit was 7 months ago. That's long enough that you should check whether the maintainer is responding to issues before depending on it.