About Gdc
Gdc is an MCP server published by pipeworx-io in the Developer Tools category: nCI Genomic Data Commons (GDC) MCP.
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Install
From source
git clone https://github.com/pipeworx-io/mcp-gdcThis server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.
Tools (4)
get_projectLook up a single NCI GDC project by project_id (e.g. "TCGA-BRCA") and get its details plus summary counts (case_count, file_count). Keyless, open-access metadata.
Parameters not published.
list_projectsList NCI Genomic Data Commons cancer-genomics projects (TCGA, TARGET, CPTAC, etc.), ranked by case count. Returns project_id, name, program, primary site(s) and disease type(s). Keyless, open-access metadata.
Parameters not published.
search_casesSearch NCI GDC cancer cases (patients/samples) by primary site and/or project. Returns case_id, submitter_id, primary site, disease type and project_id. Keyless, open-access metadata.
Parameters not published.
search_filesSearch NCI GDC genomic data files by project and/or data category (e.g. "Transcriptome Profiling", "Simple Nucleotide Variation", "DNA Methylation"). Returns file_id, file_name, data category/type/format, access level and file size. Keyless, open-access metadata.
Parameters not published.
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