1. Conduid
  2. Developer Tools
  3. io.github.cyanheads/ensembl-mcp-server
MCP server · Developer Tools

io.github.cyanheads/ensembl-mcp-server

by · github.com/cyanheads/ensembl-mcp-server

Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.

Unclaimed devtools
InstallView source
37Low

Scored 4 months ago · breakdown

About io.github.cyanheads/ensembl-mcp-server

io.github.cyanheads/ensembl-mcp-server is an MCP server published by cyanheads in the Developer Tools category: look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.

The repository has 3 stars and 0 forks, with the last commit 2 days ago. Recent commit activity is the strongest signal that reported issues will get attention.

Install

Claude Code
claude mcp add io-github-cyanheads-ensembl-mcp-server -- npx -y @cyanheads/ensembl-mcp-server
npx
npx -y @cyanheads/ensembl-mcp-server

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (7)

ensembl_get_homologyFind orthologs and/or paralogs of a gene across species with percent identity and taxonomy level

Parameters not published.

ensembl_get_sequenceFetch the DNA, cDNA, CDS, or protein sequence for a gene, transcript, protein, or genomic region

Parameters not published.

ensembl_get_xrefsRetrieve cross-database references for a gene — HGNC, UniProt, EntrezGene, OMIM, RefSeq, Reactome, and others

Parameters not published.

ensembl_list_speciesList species supported by Ensembl with display name, common name, assembly, taxon ID, and division

Parameters not published.

ensembl_lookup_geneResolve a gene by symbol (synonyms and former symbols included) + species or by stable ID to its Ensembl ID, genomic location, biotype, and transcript list

Parameters not published.

ensembl_predict_variantPredict functional consequences of a sequence variant using the Ensembl Variant Effect Predictor (VEP)

Parameters not published.

ensembl_query_regionFind genomic features (genes, transcripts, variants, regulatory elements, exons) overlapping a chromosomal region

Parameters not published.

Ask AI

✦

Ask AI about io.github.cyanheads/ensembl-mcp-server

Powered by Claude · Grounded in docs

I know everything about io.github.cyanheads/ensembl-mcp-server. Ask me about installation, configuration, usage, or troubleshooting.

Security checks

6 checks have not been run yet.

Questions

About io.github.cyanheads/ensembl-mcp-server

How do I install io.github.cyanheads/ensembl-mcp-server?

Run claude mcp add io-github-cyanheads-ensembl-mcp-server -- npx -y @cyanheads/ensembl-mcp-server, then add the server to your MCP client's configuration.

Is io.github.cyanheads/ensembl-mcp-server safe to use with an AI agent?

Its trust score is 37 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is io.github.cyanheads/ensembl-mcp-server still maintained?

Yes — the last commit was 2 days ago. The repository has 3 stars and 0 forks.