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MCP server · Healthcare

Mavedb Link

· github.com/berntpopp/mavedb-link

MCP server for MaveDB: quantitative variant-effect scores from Multiplexed Assays of Variant Effect (MAVE) and deep mutational scanning — functional evidence as typed tools for LLM agents.

Unclaimed bioinformaticsclaudedeep-mutational-scanningfastmcpfunctional-genomicsgenefoundryllm-toolsmavedbmcpmcp-servermodel-context-protocolvariant-effectvariant-interpretation
InstallView source
34Low

Scored a month ago · breakdown

About Mavedb Link

Mavedb Link is an MCP server in the Healthcare category: mCP server for MaveDB: quantitative variant-effect scores from Multiplexed Assays of Variant Effect (MAVE) and deep mutational scanning — functional evidence as typed tools for LLM agents.

Install

From source
git clone https://github.com/berntpopp/mavedb-link

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (15)

find_variantOne variant's score + class across **every** score set — anchored by GA4GH VRS id, `variant_urn`, or a bare `hgvs=` (+ optional `gene_symbol=`) resolved to VRS internally

Parameters not published.

get_classified_variantsEvery variant in a calibrated functional class (e.g. all `abnormal` / PS3), with scores

Parameters not published.

get_collectionCurated collection members (URN from a score set's `official_collections`, or mavedb.org)

Parameters not published.

get_diagnosticsLive API reachability + version + mirror/cache/runtime metrics

Parameters not published.

get_experimentExperiment record + child score-set URNs

Parameters not published.

get_gene_score_setsAll published MAVE datasets for an HGNC gene symbol (lean listing with a `has_calibrations` flag)

Parameters not published.

get_hgvs_validationValidate an HGVS string and surface *why* it is invalid (reference mismatch, missing accession)

Parameters not published.

get_mapped_variantsGenome-mapped GA4GH VRS alleles + ClinGen Allele IDs for a score set

Parameters not published.

get_score_distributionServer-side summary stats (quartiles, histogram) + a query score's percentile and class

Parameters not published.

get_score_setScore-set record (targets, publications, licence) **+ `score_calibrations`: ACMG/OddsPath thresholds**

Parameters not published.

Show all 15 tools
get_server_capabilitiesDiscovery surface: tools, signatures, limits, error taxonomy

Parameters not published.

get_variant_scoreOne variant's score + per-calibration classification (by variant URN, or score-set URN + HGVS)

Parameters not published.

get_variant_scoresThe quantitative variant × score table (paged); each row carries its calibrated functional class

Parameters not published.

search_experimentsFull-text experiment search

Parameters not published.

search_score_setsFull-text + faceted search of score sets (gene, organism, author, journal, keyword)

Parameters not published.

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Questions

About Mavedb Link

How do I install Mavedb Link?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Mavedb Link safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Mavedb Link still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.