- Conduid
- Marketplace
- #bioinformatics
MCP servers tagged bioinformatics
32 live MCP servers tagged "bioinformatics", ranked by trust score. Tags come from package metadata and repository topics, so this list covers servers across every category that work with bioinformatics.
Py3plex
Py3plex - A multilayer complex network visualization and analysis library in python3
Clinicaltrialsgov MCP Server
MCP server for the ClinicalTrials.gov v2 API. Allow LLMs to search trials, retrieve study details, compare studies, analyze trends, and match patients to eligible trials.
cafferychen777/ChatSpatial
🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.
Opentargets MCP
MCP server for Open Targets Data
Pubmed Search MCP
🔬 Professional MCP server for biomedical literature research — 40 tools, multi-source search (PubMed, Europe PMC, CORE, OpenAlex), full-text access, citation networks, PICO analys…
Alphafold MCP Server
A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structur…
Pdb MCP Server
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic ac…
Augmented Nature Uniprot MCP Server
A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.
Medical Mcps
A collection of MCP tools for AI agents to interact with major biomedical databases
Precision Medicine MCP
Precision Medicine MCP Platform: A set of bioinformatics servers + tools - production multiomics/genomics + spatial transcriptomics. Example and demo for ovarian cancer
Biomed Agent
Connecting AI agent to biomedical data
Ensembl MCP Server
A full-featured Model Context Protocol (MCP) server that exposes Ensembl’s REST API. Built using the TypeScript MCP SDK
Omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Awesome AI For Science
A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.
Pharmacogenomics
MCP server for pharmacogenomics — ClinVar, PharmGKB, gnomAD, OpenTargets, and clinical trials from Claude
longevity-genie/biothings-mcp
MCP (Model Context Protocol) server for biothings
Surechembl MCP Server
A comprehensive Model Context Protocol (MCP) server for accessing the SureChEMBL chemical patent database.
ScienceClaw
ScienceClaw is a personal research assistant built with LangChain DeepAgents and AIO Sandbox infrastructure, adopting a completely new architecture beyond OpenClaw. It offers stro…
K Dense Byok
An AI co-scientist powered by Scientific Agent Skills running on your desktop.
hlydecker/ucsc-genome-mcp
An MCP server to interact with the UCSC Genome Browser API
Wisp Science
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
Spmind
ICML 2026 autonomous AI agent for end-to-end spatial proteomics analysis, with SP-Bench for agentic multiplexed-imaging workflows.
Awesome Bio Agent Skills
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
Augmented Nature Uniprot Server
A comprehensive Model Context Protocol server for accessing UniProt protein database with 26 bioinformatics tools for protein research, comparative genomics, and systems biology
Motif
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive w…
AlterLab Academic Skills
183 evaluated academic Claude/agent skills across 13 research domains — bioinformatics, cheminformatics, data science, databases, clinical & more. Every skill ships an executable…
Agr MCP Server
MCP server for Alliance of Genome Resources - access genomics data across model organisms
Lifesciences Research
AI Agent wrappers for Life Sciences APIs (Open Targets, ChEMBL, UniProt). Accelerating drug discovery with Model Context Protocol (MCP) and FastMCP.
PDBe MCP Servers
PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph…
Posebusters MCP Server
Unofficial MCP server for PoseBusters – validate molecular poses via HTTP or Spaces using the Model Context Protocol (MCP).
Biothings Typed Client
Client that provides typed definitions to biothings client
SEOSiri-Official/biorobotics
code coordinates using the Model Context Protocol. 🐍 🏠 🍎 🪟 🐧