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MCP servers tagged bioinformatics
167 live MCP servers tagged "bioinformatics", ranked by trust score. Tags come from package metadata and repository topics, so this list covers servers across every category that work with bioinformatics.
SDK Typescript
A model-driven approach to building AI agents in just a few lines of code.
Py3plex
Py3plex - A multilayer complex network visualization and analysis library in python3
Clinicaltrialsgov MCP Server
Search ClinicalTrials.gov trials, retrieve study details and results, and match patients to eligible trials via MCP. STDIO or Streamable HTTP.
cafferychen777/ChatSpatial
MCP server for spatial transcriptomics analysis through natural language interfaces.
Opentargets MCP
MCP server for Open Targets data
Pubmed Search MCP
MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, full text, citations, and tenant-safe deployment.
Alphafold MCP Server
A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structur…
Pdb MCP Server
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic ac…
Augmented Nature Uniprot MCP Server
A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.
Open Science
The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python…
Precision Medicine MCP
Precision Medicine MCP Platform: A set of bioinformatics servers + tools - production multiomics/genomics + spatial transcriptomics. Examples for ovarian cancer, breast cancer and…
Medical Mcps
A collection of MCP tools for AI agents to interact with major biomedical databases
Biomed Agent
Connecting AI to biomedical data
Omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Awesome AI For Science
A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.
Pharmacogenomics
MCP server for pharmacogenomics — ClinVar, PharmGKB, gnomAD, OpenTargets, and clinical trials from Claude
longevity-genie/biothings-mcp
MCP (Model Context Protocol) server for biothings
Surechembl MCP Server
A comprehensive Model Context Protocol (MCP) server for accessing the SureChEMBL chemical patent database.
ScienceClaw
ScienceClaw is a personal research assistant built with LangChain DeepAgents and AIO Sandbox infrastructure, adopting a completely new architecture beyond OpenClaw. It offers stro…
ScienceClaw
ScienceClaw is a personal research assistant built with LangChain DeepAgents and AIO Sandbox infrastructure, adopting a completely new architecture beyond OpenClaw. It offers stro…
Chorus
One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English analysis through MCP.
K Dense Byok
An AI co-scientist powered by Scientific Agent Skills running on your desktop.
hlydecker/ucsc-genome-mcp
An MCP server to interact with the UCSC Genome Browser API
Wisp Science
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
Spmind
ICML 2026 autonomous AI agent for end-to-end spatial proteomics analysis, with SP-Bench for agentic multiplexed-imaging workflows.
Chorus
One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English analysis through MCP.
MCP
MCP server for 200M+ patents, scientific literature, chemistry and pharma records. Search prior art and R&D intelligence powered by PatSnap's proprietary databases via Claude, Cur…
Awesome Bio Agent Skills
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
Operon
AI-powered IDE for bioinformatics — built by biologists, for biologists
Augmented Nature Uniprot Server
A comprehensive Model Context Protocol server for accessing UniProt protein database with 26 bioinformatics tools for protein research, comparative genomics, and systems biology
Motif
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive w…
Motif
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive w…
Bio MCP
🧬 BioMCP — bioinformatics MCP server: 83 tools · 43 databases · PubMed/NCBI/BLAST/PDB/UniProt/enrichment · `pip install biomcp-server` · 生信 MCP 服务器
AlterLab Academic Skills
183 evaluated academic Claude/agent skills across 13 research domains — bioinformatics, cheminformatics, data science, databases, clinical & more. Every skill ships an executable…
Biolink Agent
Multi-agent AI platform for biomedical & genomic research — query PubMed, ClinVar, Ensembl, UniProt and 10+ scientific databases with natural language.
Agr MCP Server
MCP server for Alliance of Genome Resources - access genomics data across model organisms
CSCCD MetagenomeFlow
Gut-metagenome multi-kingdom analysis platform: 183-script + Snakemake pipeline, agent-driven mining loop, MCP visualization — VibeCoding-ready
Gromacs MCP
MCP server driving local GROMACS workflows for molecular dynamics setup, runs, and analysis.
MedClaw
Open-source biomedical research agent with 60+ offline tools: variant interpretation. Use via web chat UI or MCP (DeepSeek-harness compatible).
Biocontext
Authoritative Biological Entity Resolution & Contextual Intelligence Framework (MCP-native for AI Agents)
Genomics Caddy
Local-first desktop DNA explorer for AncestryDNA and 23andMe. Trait reports, pharmacogenomics, optional Ollama chat, and an MCP server — DNA stays on your machine.
SpatialOmicsLab
SpatialOmicsLab: an integrated research environment for AI co-scientists in spatial transcriptomics
Clew
Lineage-based impact analysis and remediation for workflow runs. What a bad input or an incident report reached, what to re-run, delete or disclose, sealed as evidence an auditor…
Molecullage
Figures of protein structures, sequences, contact maps, pipelines and plots for papers: an HTML page kit printed to vector PDF and PNG, flat ChimeraX renders, QA checks, and a Cla…
DeepMAST
Evidence-governed agent harness for spatial transcriptomics — pipeline building, CCI interpretation, and drug target prioritization with LangGraph, Deep Agents, and MCP
Vcf MCP
MCP Connector for VCF Genetic Data File(s). Single, multiple, comparison, data setting, etc.
Awesome Scientific AI Tools
Discover AI tools, MCP servers, and agent skills for scientific research across literature, data, writing, and lab work
Biorxiv MCP
MCP server that turns a bioRxiv DOI into clean markdown full text (S3 .meca → JATS → markdown), plus free Europe PMC search. (medRxiv has its own package, medrxiv-mcp.)
Kegg String MCP
LLM workflow to annotate genes with provenance and verification: MCP server exposing KEGG, STRING and PubMed as model-callable tools, plus an agentic annotation pipeline that veri…
Bioresearcher Skills
Agent Skills/Plugins/Connectors for biomedical research with the biomcp-ts MCP server.