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MCP server · Data

Pombase

by · github.com/pipeworx-io/mcp-pombase

PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.

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Scored 4 months ago · breakdown

About Pombase

Pombase is an MCP server published by pipeworx-io in the Data category: pomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.

Recent commit activity is the strongest signal that reported issues will get attention.

Install

From source
git clone https://github.com/pipeworx-io/mcp-pombase

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (2)

get_genePomBase (fission yeast / S. pombe model-organism DB): look up a gene by its PomBase systematic id and return its product, protein domains (InterPro), deletion viability, UniProt id, and curation status. Keyless. NOTE: requires a systematic id like "SPAC1002.01" or "SPBC2F12.13" — standard gene names like "cdc2" are NOT resolved by this API. Complements SGD (budding yeast).

Parameters not published.

get_referencePomBase: look up a curated S. pombe publication by its PubMed id (e.g. "PMID:11739790") and return its title, citation, authors, year, abstract, and how many genes it annotates. Keyless.

Parameters not published.

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Questions

About Pombase

How do I install Pombase?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Pombase safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Pombase still maintained?

Yes — the last commit was 27 days ago. The repository has 0 stars and 0 forks.