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MCP server · Data

Pombase MCP

by · github.com/ubcd-ibfg/pombase-mcp

An MCP server that gives AI agents structured access to PomBase, the comprehensive database for the fission yeast Schizosaccharomyces pombe.

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34Low

Scored a month ago · breakdown

About Pombase MCP

Pombase MCP is an MCP server published by ubcd-ibfg in the Data category: an MCP server that gives AI agents structured access to PomBase, the comprehensive database for the fission yeast Schizosaccharomyces pombe.

Recent commit activity is the strongest signal that reported issues will get attention.

Install

From source
git clone https://github.com/ubcd-ibfg/pombase-mcp

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (8)

pombase_compare_genesWorkflow tool: fetches 2-10 genes in parallel and returns a side-by-side comparison (product, viability, characterisation status, ortholog counts).

Parameters not published.

pombase_get_gene_domainsProtein domain/motif annotations: InterPro matches (source DB, coordinates, descriptions) and transmembrane domain coordinates.

Parameters not published.

pombase_get_gene_go_annotationsGene Ontology annotations (Molecular Function, Biological Process, Cellular Component), optionally filtered to one aspect.

Parameters not published.

pombase_get_gene_interactionsCurated physical and/or genetic interactions, with interactor names, evidence, and source references.

Parameters not published.

pombase_get_gene_orthologsCurated human and *S. cerevisiae* orthologs of the gene.

Parameters not published.

pombase_get_gene_phenotypesFYPO (Fission Yeast Phenotype Ontology) annotations plus the gene's deletion viability (essential vs. non-essential).

Parameters not published.

pombase_get_gene_summaryCore identifying info for a gene: name, product, synonyms, genomic location, taxon, UniProt/BioGRID IDs, characterisation status, deletion viability.

Parameters not published.

pombase_search_genesSearch/browse genes by name, systematic ID, or product keyword. Use this to resolve a gene name (e.g. `cdc2`) to its systematic ID (e.g. `SPBC11B10.09`). Supports pagination.

Parameters not published.

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Questions

About Pombase MCP

How do I install Pombase MCP?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Pombase MCP safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Pombase MCP still maintained?

Yes — the last commit was 3 months ago. The repository has 0 stars and 0 forks.