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MCP server · Healthcare

Stringdb Link

· github.com/berntpopp/stringdb-link

MCP server for STRING v12: protein–protein association networks, interaction partners, and functional enrichment analysis — as typed tools for LLM agents.

Unclaimed bioinformaticsclaudefastmcpfunctional-enrichmentgenefoundryllm-toolsmcpmcp-servermodel-context-protocolnetwork-biologyprotein-protein-interactionproteomicsstring-db
InstallView source
34Low

Scored a month ago · breakdown

About Stringdb Link

Stringdb Link is an MCP server in the Healthcare category: mCP server for STRING v12: protein–protein association networks, interaction partners, and functional enrichment analysis — as typed tools for LLM agents.

Install

From source
git clone https://github.com/berntpopp/stringdb-link

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (10)

compute_functional_enrichmentEnrichment over GO, KEGG, UniProt keywords, PubMed, Pfam, InterPro and SMART

Parameters not published.

compute_ppi_enrichmentTest whether a protein set has more interactions than expected by chance

Parameters not published.

get_functional_annotationsRetrieve the functional annotations attached to each protein

Parameters not published.

get_interaction_partnersList a protein's STRING interaction partners

Parameters not published.

get_network_imageRender the network as an image (PNG, high-res PNG, or SVG)

Parameters not published.

get_network_linkBuild a shareable link to the network on the STRING website

Parameters not published.

get_protein_homology_best_hitsBest similarity hit per species for the input proteins

Parameters not published.

get_protein_homology_scoresPairwise protein similarity (bit-scores) among the input proteins

Parameters not published.

resolve_protein_identifiersMap gene symbols, synonyms or UniProt accessions to STRING protein IDs

Parameters not published.

search_protein_interactionsRetrieve the interaction network among a set of proteins

Parameters not published.

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Questions

About Stringdb Link

How do I install Stringdb Link?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Stringdb Link safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Stringdb Link still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.