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MCP server · Blockchain

Biocontext

by · github.com/CORE-Lab-Research/biocontext

Authoritative Biological Entity Resolution & Contextual Intelligence Framework (MCP-native for AI Agents)

Unclaimed bioinformaticsentity-resolutiongenomicshgncmcpmodel-context-protocolncbiuniprot
InstallView source
34Low

Scored 21 days ago · breakdown

About Biocontext

Biocontext is an MCP server published by CORE-Lab-Research in the Blockchain category: authoritative Biological Entity Resolution & Contextual Intelligence Framework (MCP-native for AI Agents).

The repository has 2 stars and 1 forks, with the last commit 7 days ago. Recent commit activity is the strongest signal that reported issues will get attention.

Install

From source
git clone https://github.com/CORE-Lab-Research/biocontext

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

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Security checks

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Releases

v1.0.1v1.0.1: Hardened Knowledge Graph, Concurrency & Layer Visibility · 10 Oct 2026What's Changed in v1.0.1 Critical Fixes & Production Hardening CLI & Docker `serve` sub-command: Fixed command mismatch between Dockerfile (`CMD ["serve"]`) and CLI parser (added alias `server`). GO Layer Visibility: Fixed silent…
v1.0.0v1.0.0: General Availability - Python SDK & REST API v1 · 10 Oct 2026What's Changed in v1.0.0 Unified Python SDK & REST API v1 (PRD-18) Shipped unified high-level Python client `BioContext` in `src/biocontext/__init__.py`. Built standalone REST API v1 server (`biocontext api --port 8000`) supporting…
v0.9.0v0.9.0: Ontological Multi-hop Traversal & Reasoning Engine · 10 Oct 2026What's Changed in v0.9.0 Ontological Multi-Hop Traversal Engine (PRD-22) Implemented deterministic graph traversal (`TraversalEngine`) linking biological queries across genes, proteins, pathways, and diseases. Explores connected paths up…
v0.8.0v0.8.0 - Biological Knowledge Graph Architecture · 10 Oct 2026What's Changed Knowledge Graph Core (PRD-21): Implemented ontological biological Knowledge Graph models, in-memory store, and subgraph builder pipeline. Multi-layer Entity Connections: Seamlessly traverses and builds subgraphs across…
v0.7.0v0.7.0: Literature Intelligence (Europe PMC & PubMed) · 29 Sep 2026BioContext v0.7.0: Literature Intelligence What's New Europe PMC & PubMed Literature Adapter: Full querying capabilities for biomedical publications via Europe PMC REST API. Resolves queries by gene symbol, disease entity, PubMed ID…
Questions

About Biocontext

How do I install Biocontext?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Biocontext safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Biocontext still maintained?

Yes — the latest release is v1.0.1 (10 Oct 2026), and the last commit was 7 days ago. The repository has 2 stars.