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MCP servers tagged genomics
45 live MCP servers tagged "genomics", ranked by trust score. Tags come from package metadata and repository topics, so this list covers servers across every category that work with genomics.
cafferychen777/ChatSpatial
MCP server for spatial transcriptomics analysis through natural language interfaces.
Opentargets MCP
MCP server for Open Targets data
Chorus
One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English analysis through MCP.
Chorus
One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English analysis through MCP.
Awesome Bio Agent Skills
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
Operon
AI-powered IDE for bioinformatics — built by biologists, for biologists
GenomeMCP
An AI-driven genomic intelligence system delivering structured ClinVar interpretation and high-precision exon, intron, and gene queries using the Model Context Protocol (MCP).
GenomeMCP
An AI-driven genomic intelligence system delivering structured ClinVar interpretation and high-precision exon, intron, and gene queries using the Model Context Protocol (MCP).
Bio MCP
🧬 BioMCP — bioinformatics MCP server: 83 tools · 43 databases · PubMed/NCBI/BLAST/PDB/UniProt/enrichment · `pip install biomcp-server` · 生信 MCP 服务器
Biolink Agent
Multi-agent AI platform for biomedical & genomic research — query PubMed, ClinVar, Ensembl, UniProt and 10+ scientific databases with natural language.
Agr MCP Server
MCP server for Alliance of Genome Resources - access genomics data across model organisms
Biocontext
Authoritative Biological Entity Resolution & Contextual Intelligence Framework (MCP-native for AI Agents)
Genomics Caddy
Local-first desktop DNA explorer for AncestryDNA and 23andMe. Trait reports, pharmacogenomics, optional Ollama chat, and an MCP server — DNA stays on your machine.
Mirobody Rare
Rare-disease plugin for Mirobody — codes clinical narratives to HPO, reads trio VCF/PED, DICOM and EEG attachments, and ranks Orphanet diagnoses for AI agents.
Vcf MCP
MCP Connector for VCF Genetic Data File(s). Single, multiple, comparison, data setting, etc.
Heuris BioMCP
BioMCP - Comprehensive MCP server for bioinformatics and life sciences
Vcf MCP
MCP Connector for VCF Genetic Data File(s). Single, multiple, comparison, data setting, etc.
SEOSiri-Official/biorobotics
code coordinates using the Model Context Protocol. 🐍 🏠 🍎 🪟 🐧
Mgi Link
MCP server for MGI (Mouse Genome Informatics): mouse gene, allele, mutation and phenotype data — the MGI marker page as structured tools, served from a local SQLite index.
Mygene MCP
MCP server for MyGene.info API
Mydisease MCP
MCP server for MyDisease.info API
Gtex Link
MCP server for the GTEx Portal: tissue-specific gene expression — median and per-sample TPM, top expressed genes per tissue, and gene/transcript annotation — as typed tools for LL…
Litvar Link
MCP server for NCBI LitVar2: search the biomedical literature by genetic variant — the index linking variants to the publications that mention them, as typed tools for LLM agents.
Vcf MCP Server
MCP Server to facilitate exploring Variant Calling Format (VCF) files using LLM agents
Gnomad Link
MCP server for gnomAD (Genome Aggregation Database): variant allele frequencies, gene constraint, coverage, structural and mitochondrial variants, and liftover — as typed tools fo…
Genepattern MCP
MCP server that lets AI assistants (Claude, Cursor, Copilot) run GenePattern bioinformatics modules, manage cloud jobs, and access genomic data — all through natural language.
Claude Code Biology Research
?? A comprehensive guide to using Claude Code as an AI-powered assistant for computational biology, bioinformatics, and biomedical research
Agentic Genomics
Connect whole-genome sequencing data to AI coding assistants via the Model Context Protocol (MCP). Setup guides for GeneChat-MCP, OpenCRAVAT-MCP, and Pomera across Antigravity, Co…
Genefoundry
A modular registry for trustworthy, evidence-based genomic analysis powered by Model Context Protocols (MCPs). Bridging AI and clinical genomics with traceable, validated data ret…
Flowproof MCP
Run reproducible bioinformatics pipelines from an AI assistant over MCP, with verifiable provenance
Litmuz Agent
Claim-level verification for life-sciences research agents: honest, auditable, per-claim traffic-light verdicts against the primary literature and genomic reference data. MCP-nati…
Bioinformatics MCP
🧬 A comprehensive MCP server for bioinformatics — 62 tools for genomics, transcriptomics, epigenetics & more. Connects AI agents to scanpy, biopython, squidpy, NCBI, UniProt, Ense…
Spliceailookup Link
MCP server for SpliceAI Lookup (Broad Institute): SpliceAI, Pangolin and SpliceAI-10k splice-impact predictions for variants, plus an Ensembl VEP-backed variant resolver.
Clingen Link
MCP server for ClinGen (Clinical Genome Resource): gene–disease validity, dosage sensitivity, clinical actionability, and expert-panel variant pathogenicity (ERepo) — as typed too…
Gencc Link
MCP server for GenCC (Gene Curation Coalition): harmonized gene–disease validity classifications across member submitters, with consensus and conflict detection per gene–disease p…
Scikit
A unified life science data layer for your AI agents - genomics, proteomics, drug discovery, clinical trials across 300+ databases.
Hic MCP
MCP server for Hi-C / 3D-chromatin analysis: the open2c stack (cooler, cooltools) as agent tools over local .mcool files, with a real Micro-C dataset bundled so it runs offline.
Lab Ops Accelerator
Production AI agent for genetic testing lab exception handling. Features LangGraph orchestration, MCP-based LIMS/EHR integration, RAG protocol retrieval, and HITL review
Researcher Skill
Build focused research for Claude Code with one skill, three reference packs, and a clear workflow for mapping, judging, and synthesizing sources
Rag Pipeline Grounded LLM Genomics
LLM · RAG · MCP: a retrieval-augmented pipeline that answers questions over my ageing & exercise genomics research from papers and gene-level results, with cited, grounded answers…
Bio Harness
I want to explore how NVIDIA-labs Object Oriented Agents written in python compare with a LangGraph approach for bioinformatic pipelines and the deterministic execution layer for…
Autonomous Bioinformatics Agent
An autonomous, human-in-the-loop bioinformatics research agent that performs end-to-end RNA-Seq differential expression analysis, dynamic multi-MCP routing, and evidence-grounded…
Bioinformatics MCP Skills
Bioinformatics skills and mcp
Monarch MCP
MCP server for Monarch Initiative Data
Sample Agentcore Scverse
No description published.