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MCP servers tagged reproducible-research

52 live MCP servers tagged "reproducible-research", ranked by trust score. Tags come from package metadata and repository topics, so this list covers servers across every category that work with reproducible-research.

52
live servers
37
avg trust
5.2K
most stars
1

Open Science

aipoch

The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python…

★ 5.2Kupdated 11 hours agoApache-2.0
64
2

Open Science

The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python…

★ 1.8K
64
3

Auto Empirical Research Skills

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,…

64
4

Wisp Science

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

52
5

ScientificFigureLibrary

Local-first MCP App for your scientific figures. Import, review, and publish a global library on disk; reuse exact templates in Claude Science and Wisp Science.

44
6

Research Workflow Assistant

Open-source AI research assistant for VS Code + GitHub Copilot. Connects to PubMed, OpenAlex, Semantic Scholar, Europe PMC, CrossRef, and Zotero via MCP servers. Custom agents gui…

★ 26
39
7

Research Workflow Assistant

Intersect-Collaborations-LLC

Open-source AI research assistant for VS Code + GitHub Copilot. Connects to PubMed, OpenAlex, Semantic Scholar, Europe PMC, CrossRef, and Zotero via MCP servers. Custom agents gui…

★ 26updated 25 days ago
39
8

KabuForge

Siyuan-chat

Open-source, local-first research framework for Japanese equities, with factor and strategy research, backtesting, local paper simulation, and MCP agent interfaces.

★ 13updated 14 days ago
39
9

Assay

metahub-ai

An open, reproducible trust layer for AI artifacts — skills, MCP servers, agents, and plugins. Assay inspects code, runs sandboxed behavioral audits, and generates verifiable repo…

★ 12updated 14 days ago
39
10

Awesome Agent Skills For Empirical Research

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI 20分钟完成一篇可复现的规范实证论文,…

39
11

AlterLab Academic Skills

183 evaluated academic Claude/agent skills across 13 research domains — bioinformatics, cheminformatics, data science, databases, clinical & more. Every skill ships an executable…

39
12

Zhonghao1995/agentic-swmm-workflow

modelling workflow: model building, simulation runs with manifests and continuity checks, calibration, GIS/QGIS integration, design storms and climate scenarios, uncertainty analy…

39
13

Stata Code

Agent-native Stata bridge for empirical research — run DiD/IV/RDD and publication-ready tables from Claude Code, Jupyter, or VS Code on one token-economy result schema, with Stats…

39
14

Med Paper Assistant

Auditable MCP + cross-agent harness for autonomous and human-guided academic writing—from verified evidence to reviewed DOCX/PDF.

39
15

Claude Academic Workflow

Academic research workflow for Claude Code: 20 skills covering causal inference (DiD, RDD, IV, synthetic control, field experiments, design triage, preregistration), paper reading…

39
16

Labloop

cloudcell

Secure, reproducible KVM lab for agent-driven ML research: per-user VMs with driver / trusted / hostile zone isolation, plus five standalone scientific-state MCP servers

★ 4updated 14 days ago
34
17

Local Hybrid Intelligence System With Dual Index Memory And Stateful Virtual Machine Integration

OwainGlyndwr1400

Reference implementation for the Part II architecture paper (Zenodo 10.5281/zenodo.20374393) — dual-index FAISS memory, 42-opcode quaternionic VM, 5-phase retrieval, 36 tools, MCP…

★ 2
34
18

Local Hybrid Intelligence System With Dual Index Memory And Stateful Virtual Machine Integration

AwenGrid

Reference implementation for the Part II architecture paper (Zenodo 10.5281/zenodo.20374393) — dual-index FAISS memory, 42-opcode quaternionic VM, 5-phase retrieval, 36 tools, MCP…

★ 2updated a month ago
34
19

QuantSieve

RRXXZZYY

Evidence-first, self-hosted quantitative research workbench with reproducible backtests, factor diagnostics, paper simulation, and grounded AI.

★ 1updated a month ago
34
20

Research Engine

VibeSmiths

Reproducible research engine that contests its own findings and logs every source choice.

★ 1
34
21

Lukisch

lukisch

Lukas Geiger GitHub profile for local-first AI tools, MCP servers, desktop software, and reproducible research

★ 1
34
22

Conceptual Layer

andrewgoodchild

A database's schema grounded in its data and described in sentences, ready for a text to SQL agent to read

★ 1
34
23

Viridisos

jdhart81

Open reference runtime for DOI-backed Viridis decision modules

★ 1updated 2 months ago
34
24

Research OS

VibhavSetlur

An AI-native operating system for reproducible research. Features citation-verified analysis, audited provenance, and automated data integrity pipelines.

★ 1updated 2 months ago
34
25

SAGE

MHHamdan

Official implementation of SAGE: A deployment-oriented evaluation framework for LLM-based autonomous agents (IEEE Transactions on Artificial Intelligence).

★ 1updated a month ago
34
26

Research Engine

thangnguyenworkspace

Reproducible research engine that contests its own findings and logs every source choice.

★ 1updated 2 months ago
34
27

Zhonghao1995/Agentic-MIKE-Plus

free; run/edit need Windows + a MIKE+ 2026 license. Works with Claude Code, Codex, OpenClaw, and Hermes.

34
28

Scitex Scholar

Scientific paper search, enrichment, download, and management

34
29

Scitex Hub

SciTeX Hub deployment and management CLI

34
30

Agentic Experiments

Hypothesis-first experiment tracking for agent-driven ML research, wired into Claude Code.

34
31

Zenodo MCP

🔬 Model Context Protocol (MCP) server for discoverability, retrieval, citation, and reasoning of open science datasets and publications from Zenodo. AI-native tools for agentic re…

34
32

Lab Archives MCP

Chat with your electronic lab notebooks

34
33

Genepattern MCP

MCP server that lets AI assistants (Claude, Cursor, Copilot) run GenePattern bioinformatics modules, manage cloud jobs, and access genomic data — all through natural language.

34
34

AgentAblate

Reproducible ablation testing for coding-agent skills and MCP servers.

34
35

Zemax MCP

Local Web GUI for reproducible chick/human-eye illumination experiments with guided OpticStudio verification; optional MCP automation.

34
36

LongTable

Research control plane for AI-assisted scholarship: durable human checkpoints, lawful evidence provenance, and verifiable research packages.

34
37

Crossref Local

Local CrossRef database with 167M+ works and full-text search

34
38

Evidence Gated Scientific Agent

Self-hosted evidence-gated scientific AI with isolated Python/R, independent review, deterministic validation, and complete provenance.

34
39

Plateau

Bounded context for long-horizon LLM agents: carry a small re-grounded signal instead of replaying the transcript, so a parent agent's footprint stays flat as the task grows. Reco…

34
40

Fieldy Field Study

Open empirical study of the Fieldy AI wearable — protocol, lab notebook, and tools

34
41

Socialia

scitex-ai

Unified social-media management — posting, analytics, insights

updated 4 months ago
34
42

Batter

usepancake

The backtesting engine for prediction markets. Every run ships a verifiable, reproducible receipt.

updated 4 months ago
34
43

Ecosystem Measurements

theluckystrike

Reproducible measurements of the MCP registry, the VS Code gallery, Glama, hosted MCP server endpoints and GitHub search. Twelve findings, each with the script, its raw dated outp…

34
44

Scitex Orochi

scitex-ai

Agent communication hub for the SciTeX fleet

updated 4 months ago
34
45

Scitex Io

scitex-ai

Universal scientific data I/O with a plugin format registry

updated 3 months ago
34
46

Ukrainian LLM Eval

learn-ukrainian

Reproducible Ukrainian-language evaluation of language models and agents, with optional reference tools.

34
47

Reprolith

clay-good

Auto-reproduction & certification engine for the computational biomedical modeling literature — rebuild the model, re-run it, certify whether it reproduces its own results.

34
48

Mcp4rs Media Gallery

MCP4RemoteSensing

Reproducible media-gallery pipeline for MCP4RS: query open remote-sensing sources, record provenance, and render auditable PNG/GIF examples for GitHub, Colab, and Hugging Face.

34
49

Canli Research MCP

arhancanli

MCP server for an open quant research record: every paper, killed candidate and trial count, the live paper record and the chain that shows it was not rewritten. On npm and hosted…

34
50

Checkedflow

kadubon

Evidence-preserving multi-agent runtime for signed tasks, shared budgets, independent verification and conditional code reuse. A2A, MCP, CometBFT and gVisor.

34
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