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MCP server · Blockchain

Bioinformatics MCP

· github.com/raonyguimaraes/bioinformatics-mcp

🧬 A comprehensive MCP server for bioinformatics — 62 tools for genomics, transcriptomics, epigenetics & more. Connects AI agents to scanpy, biopython, squidpy, NCBI, UniProt, Ensembl, and PubMed.

Unclaimed ai-agentsbioinformaticsbiopythonclaudegenomicsllm-toolsmcpmethylationmodel-context-protocolpythonrna-seqscanpysingle-cellspatial-transcriptomics
InstallView source
34Low

Scored a month ago · breakdown

About Bioinformatics MCP

Bioinformatics MCP is an MCP server in the Blockchain category: 🧬 A comprehensive MCP server for bioinformatics — 62 tools for genomics, transcriptomics, epigenetics & more. Connects AI agents to scanpy, biopython, squidpy, NCBI, UniProt, Ensembl, and PubMed.

Install

From source
git clone https://github.com/raonyguimaraes/bioinformatics-mcp

This server has no ConduID identity, so agent calls to it are not receipted. Pin the version you install and review the source before granting it credentials.

Tools (7)

inspect_datasetGet detailed dataset info

Parameters not published.

list_datasetsList all loaded datasets

Parameters not published.

load_10x_mtxLoad 10x Genomics Cell Ranger output

Parameters not published.

load_anndataLoad .h5ad files (AnnData format)

Parameters not published.

load_csvLoad CSV/TSV files as DataFrames

Parameters not published.

remove_datasetFree memory by removing datasets

Parameters not published.

save_anndataSave datasets to .h5ad

Parameters not published.

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Questions

About Bioinformatics MCP

How do I install Bioinformatics MCP?

No package has been published for this server, so install it from source: clone the repository and follow its README.

Is Bioinformatics MCP safe to use with an AI agent?

Its trust score is 34 out of 100 (low). Conduid hasn't run static security checks on this repository yet, so review the source yourself before granting it credentials. It has no ConduID identity yet, so agent calls to it are not receipted.

Is Bioinformatics MCP still maintained?

Conduid hasn't recorded a commit date for this repository yet. Check the repository directly for recent activity.